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1

Tarantula Toxin SGTx-1 alters Gating Kinetics of Human Voltage-Gated Sodium Channel Nav1.7

Kimball, Ian H., Nguyen, Phuong T., Yam, Jenny, Pressly, Brandon, York, Royce, Sack, Jon T., Yarov-Yarovoy, Vladimir

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 44 KB

english, 2017

2

Multipass membrane protein structure prediction using Rosetta

Vladimir Yarov-Yarovoy, Jack Schonbrun, David Baker

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 1.31 MB

english, 2006

3

Structural refinement of the hERG1 pore and voltage-sensing domains with ROSETTA-membrane and molecular dynamics simulations

Julia Subbotina, Vladimir Yarov-Yarovoy, James Lees-Miller, Serdar Durdagi, Jiqing Guo, Henry J. Duff, Sergei Yu. Noskov

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1018 KB

english, 2010

4

Autoinhibitory control of the CaV1.2 channel by its proteolytically processed distal C-terminal domain

Joanne T. Hulme, Vladimir Yarov-Yarovoy, Teddy W.-C. Lin, Todd Scheuer, William A. Catterall

Journal:

The Journal of Physiology

Year:

2006

Language:

english

File:

PDF, 753 KB

english, 2006

5

LG2 agrin mutation causing severe congenital myasthenic syndrome mimics functional characteristics of non-neural (z−) agrin

Maselli, Ricardo A., Fernandez, Jose M., Arredondo, Juan, Navarro, Carmen, Ngo, Maian, Beeson, David, Cagney, Órla, Williams, D. Colette, Wollmann, Robert L., Yarov-Yarovoy, Vladimir, Ferns, Michael J

Journal:

Year:

2012

Language:

english

File:

PDF, 819 KB

english, 2012

6

Closing In on the Resting State of the Shaker K+ Channel

Medha M. Pathak, Vladimir Yarov-Yarovoy, Gautam Agarwal, Benoît Roux, Patrick Barth, Susy Kohout, Francesco Tombola, Ehud Y. Isacoff

Journal:

Year:

2007

Language:

english

File:

PDF, 2.36 MB

english, 2007

7

Voltage-gated ion channels and gating modifier toxins

William A. Catterall, Sandrine Cestèle, Vladimir Yarov-Yarovoy, Frank H. Yu, Keiichi Konoki, Todd Scheuer

Journal:

Year:

2007

Language:

english

File:

PDF, 930 KB

english, 2007

8

The nucleotide regulatory sites on the mitochondrial KATP channel face the cytosol

Vladimir Yarov-Yarovoy, Petr Paucek, Martin Jabůrek, Keith D Garlid

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

1997

Language:

english

File:

PDF, 163 KB

english, 1997

9

A Gating Hinge in Na+ Channels: A Molecular Switch for Electrical Signaling

Yong Zhao, Vladimir Yarov-Yarovoy, Todd Scheuer, William A Catterall

Journal:

Year:

2004

Language:

english

File:

PDF, 243 KB

english, 2004

10

Molecular Dynamics Simulation of the Kv1.2 Potassium Channel

Khalili-Araghi, Fatemeh, Jogini, Vishwanath, Yarov-Yarovoy, Vladimir, Tajkhorshid, Emad, Roux, Benoit, Schulten, Klaus

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 48 KB

english, 2009

11

Interactions of H562 in the S5 Helix with T618 and S621 in the Pore Helix Are Important Determinants of hERG1 Potassium Channel Structure and Function

Lees-Miller, James P., Subbotina, Julia O., Guo, Jiqing, Yarov-Yarovoy, Vladimir, Noskov, Sergei Y., Duff, Henry J.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 1.08 MB

english, 2009

12

High-Resolution Structural Modeling of Ion Channel Pore-Forming Domains Using Rosetta

Yarov-Yarovoy, Vladimir M., DiMaio, Frank, Scheuer, Todd, Baker, David, Catterall, William A.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 36 KB

english, 2010

13

Calculation of the Gating Charge for the Kv1.2 Voltage-Activated Potassium Channel

Khalili-Araghi, Fatemeh, Jogini, Vishwanath, Yarov-Yarovoy, Vladimir, Tajkhorshid, Emad, Roux, Benoît, Schulten, Klaus

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 914 KB

english, 2010

14

Channels: Sticking to nooks and crannies

Wulff, Heike, Yarov-Yarovoy, Vladimir

Journal:

Nature Chemical Biology

Year:

2013

Language:

english

File:

PDF, 570 KB

english, 2013

15

Structural Modeling of Toxin Interactions with the Human Voltage-Gated Sodium Channel Pore

Nguyen, Phuong T., Sack, Jon T., Allen, Toby W., Yarov-Yarovoy, Vladimir

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 45 KB

english, 2014

16

Residues Critical for Voltage-Sensor Transitions Determining Gating Properties of Cav1.1

Tuluc, Petronel, Yarov-Yarovoy, Vladimir, Benedetti, Bruno, Flucher, Bernhard E.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 51 KB

english, 2014

17

A Structural Framework for the Polymodal Pain Sensor TRPV1

Yang, Fan, Yarov-Yarovoy, Vladimir, Zheng, Jie

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 42 KB

english, 2014

18

Structural Modeling of the Human Nav1.7 Sodium Channel Pore

Nguyen, Phuong T., Sack, Jon T., Allen, Toby W., Yarov-Yarovoy, Vladimir

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 44 KB

english, 2013

19

Refinement and Validation of Atomic Models of the Kv1.2 Potassium Channel Through Molecular Dynamics and Gating Charge Calculations

Khalili-Araghi, Fatemeh, Jogini, Vishwanath, Yarov-Yarovoy, Vladimir, Tajkhorshid, Emad, Roux, Benoit, Schulten, Klaus

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 50 KB

english, 2010

20

Mapping the Receptor Sites for a β-Scorpion Toxin on the Pore Module in Domain III of Voltage-Gated Sodium Channels

Zhang, Joel Z., Yarov-Yarovoy, Vladimir, Scheuer, Todd, Karbat, Izhar, Cohen, Lior, Gordon, Dalia, Gurevitz, Michael, Catterall, William A.

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 40 KB

english, 2012

21

High-Resolution Structural Modeling of Voltage-Dependent Conformational Changes in the Voltage Sensor of NaChBac

Yarov-Yarovoy, Vladimir M., DeCaen, Paul, Scheuer, Todd, Baker, David, Catterall, William A.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 37 KB

english, 2011

22

Structural Modeling of Intermediate States of the Gating Pore of NaChBac

Yarov-Yarovoy, Vladimir M., DeCaen, Paul, Scheuer, Todd, Catterall, William A.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 41 KB

english, 2009

23

Disulfide Locking Reveals Interaction of the Gating Charges with a Negative Charge in the S1 Segment During Activation of the NaChBac Voltage Sensor

DeCaen, Paul G., Yarov-Yarovoy, Vladimir, Scheuer, Todd, Catterall, William A.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 37 KB

english, 2011

24

Structural Modeling of Hexameric and Tetrameric Ion Conduction Pathways of Orai1 Channel

Fomina, Alla, Yarov-Yarovoy, Vladimir

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 41 KB

english, 2014

25

Molecular Determinants for Alpha-Scorpion Toxin Binding to the Resting State of a Voltage Sensor of Brain Sodium Channels

Wang, Jinti, Yarov-Yarovoy, Vladimir, Kahn, Roy, Gordon, Dalia, Gurevitz, Michael, Scheuer, Todd, Catterall, William A.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 37 KB

english, 2011

26

Fluorescently Labeled Tarantula Toxin Reveals Voltage Dependent Adhesion to K+ Channels

Tilley, Drew C., Eum, Kenneth S., Cohen, Bruce E., Yarov-Yarovoy, Vladimir, Sack, Jon T.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 38 KB

english, 2013

27

Structural Modeling of a Human Voltage-Gated Sodium Channel

Yarov-Yarovoy, Vladimir

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 39 KB

english, 2012

28

Rosetta Structural Modeling of Tarantula Toxin Binding to Voltage Sensors

Tilley, Drew C., Kaakati, Rayan, Yarov-Yarovoy, Vladimir, Sack, Jon T.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 39 KB

english, 2014

29

Structural Modeling of KCa3.1 Channel Interaction with Small Molecules

Yarov-Yarovoy, Vladimir, Wulff, Heike

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 40 KB

english, 2014

30

The PLM Homotetramer has a Structural Basis that Parallels that of PLB: The Leucine Zipper

Yuen, Garrick K., Mamikonian, Luiza, Li, Joseph, Yarov-Yarovoy, Vladimir, Bossuyt, Julie, Bers, Donald M.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 36 KB

english, 2013

31

Modeling Temperature-Dependent Ion Channel Protein Structural Changes with Rosetta

Yang, Fan, Yarov-Yarovoy, Vladimir, Zheng, Jie

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 50 KB

english, 2013

32

Common Interaction Surfaces for Tarantula Toxins Targeting Kv and ASIC Channels

Zamanian, Maryam, Bae, Chanhyung, Tilley, Drew, Gupta, Kanchan, Sack, Jon, Yarov-Yarovoy, Vladimir, Kim, Jae II, Swartz, Kenton

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 60 KB

english, 2014

33

Computational models for predictive cardiac ion channel pharmacology

Yarov-Yarovoy, Vladimir, Allen, Toby W., Clancy, Colleen E.

Journal:

Drug Discovery Today: Disease Models

Year:

2014

Language:

english

File:

PDF, 1.58 MB

english, 2014

34

Mapping the receptor site for α-scorpion toxins on a Na⁺ channel voltage sensor

Jinti Wang, Vladimir Yarov-Yarovoy, Roy Kahn, Dalia Gordon, Michael Gurevitz, Todd Scheuer and William A. Catterall

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.55 MB

english, 2011

35

Constitutive coupling of a naturally occurring human alpha1a-adrenergic receptor genetic variant to EGFR transactivation pathway

Anush Oganesian, Vladimir Yarov-Yarovoy, William C. Parks and Debra A. Schwinn

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.48 MB

english, 2011

36

Positive KCa Channel Gating Modulators with Selectivity for KCa3.1

Brown, Brandon M., Coleman, Nichole, Yarov-Yarovoy, Vladimir, Wulff, Heike

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 43 KB

english, 2015

37

Na + channel function, regulation, structure, trafficking and sequestration

Chen-Izu, Ye, Shaw, Robin M., Pitt, Geoffrey S., Yarov-Yarovoy, Vladimir, Sack, Jon T., Abriel, Hugues, Aldrich, Richard W., Belardinelli, Luiz, Cannell, Mark B., Catterall, William A., Chazin, Walter

Journal:

The Journal of Physiology

Year:

2015

Language:

english

File:

PDF, 494 KB

english, 2015

38

Structural mechanism underlying capsaicin binding and activation of the TRPV1 ion channel

Yang, Fan, Xiao, Xian, Cheng, Wei, Yang, Wei, Yu, Peilin, Song, Zhenzhen, Yarov-Yarovoy, Vladimir, Zheng, Jie

Journal:

Nature Chemical Biology

Year:

2015

Language:

english

File:

PDF, 1.99 MB

english, 2015

39

Identification of amino acid determinants in CYP4B1 for optimal catalytic processing of 4-ipomeanol

Wiek, Constanze, Schmidt, Eva M., Roellecke, Katharina, Freund, Marcel, Nakano, Mariko, Kelly, Edward J., Kaisers, Wolfgang, Yarov‑Yarovoy, Vladimir, Kramm, Christof M., Rettie, Allan E., Hanenberg, H

Journal:

Biochemical Journal

Year:

2015

Language:

english

File:

PDF, 1.60 MB

english, 2015

40

Catalytic residues and a predicted structure of tetrahydrobiopterin-dependent alkylglycerol mono-oxygenase

Watschinger, Katrin, Fuchs, Julian E., Yarov‑Yarovoy, Vladimir, Keller, Markus A., Golderer, Georg, Hermetter, Albin, Werner‑Felmayer, Gabriele, Hulo, Nicolas, Werner, Ernst R.

Journal:

Biochemical Journal

Year:

2012

Language:

english

File:

PDF, 656 KB

english, 2012

41

Molecular Mechanism of TRPV1 Activation by Capsaicin

Yang, Fan, Xiao, Xian, Cheng, Wei, Yang, Wei, Yarov-Yarovoy, Vladimir, Zheng, Jie

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 45 KB

english, 2015

42

Small Molecule Modulation of Voltage-Gated Ion Channels

Wulff, Heike, Yarov-Yarovoy, Vladimir

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 40 KB

english, 2015

43

Validation of KCa3.1 Channel Nifedipine Interaction Site Predicted by Rosetta Modeling Method

Nguyen, Hai M., Wulff, Heike, Yarov-Yarovoy, Vladimir

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 62 KB

english, 2015

44

A pain-inducing centipede toxin targets the heat activation machinery of nociceptor TRPV1

Yang, Shilong, Yang, Fan, Wei, Ningning, Hong, Jing, Li, Bowen, Luo, Lei, Rong, Mingqiang, Yarov-Yarovoy, Vladimir, Zheng, Jie, Wang, KeWei, Lai, Ren

Journal:

Nature Communications

Year:

2015

Language:

english

File:

PDF, 2.43 MB

english, 2015

45

The bipolar assembly domain of the mitotic motor kinesin-5

Acar, Seyda, Carlson, David B., Budamagunta, Madhu S., Yarov-Yarovoy, Vladimir, Correia, John J., Niñonuevo, Milady R., Jia, Weitao, Tao, Li, Leary, Julie A., Voss, John C., Evans, James E., Scholey,

Journal:

Nature Communications

Year:

2013

Language:

english

File:

PDF, 817 KB

english, 2013

46

A Polybasic Plasma Membrane Binding Motif in the I-II Linker Stabilizes Voltage-gated Ca V 1.2 Calcium Channel Function

Kaur, Gurjot, Pinggera, Alexandra, Ortner, Nadine J., Lieb, Andreas, Sinnegger-Brauns, Martina J., Yarov-Yarovoy, Vladimir, Obermair, Gerald J., Flucher, Bernhard E., Striessnig, Jörg

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 2.92 MB

english, 2015

47

Molecular Interactions in the Voltage Sensor Controlling Gating Properties of CaV Calcium Channels

Tuluc, Petronel, Yarov-Yarovoy, Vladimir, Benedetti, Bruno, Flucher, Bernhard E.

Journal:

Year:

2015

Language:

english

File:

PDF, 2.71 MB

english, 2015

48

Mechanisms of Calmodulin Regulation of Different Isoforms of Kv7.4 K + Channels

Sihn, Choong-Ryoul, Kim, Hyo Jeong, Woltz, Ryan L., Yarov-Yarovoy, Vladimir, Yang, Pei-Chi, Xu, Jun, Clancy, Colleen E., Zhang, Xiao-Dong, Chiamvimonvat, Nipavan, Yamoah, Ebenezer N.

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 4.03 MB

english, 2015

49

Gating charge interactions with the S1 segment during activation of a Na+channel voltage sensor

Paul G. DeCaen, Vladimir Yarov-Yarovoy, Todd Scheuer and William A. Catterall

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 1.85 MB

english, 2011

50

Helical motion of an S4 voltage sensor revealed by gating pore currents

Catterall, William A., Yarov-Yarovoy, Vladimir

Journal:

Year:

2010

Language:

english

File:

PDF, 934 KB

english, 2010